# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0
PortGroup           R 1.0

R.setup             bioconductor Bioconductor BiocParallel 1.42.1
revision            1
categories-append   bioconductor parallel
maintainers         nomaintainer
license             {Boost-1 GPL-2 GPL-3}
description         Bioconductor facilities for parallel evaluation
long_description    {*}${description}
checksums           rmd160  2bc61f4882c565ada6047674dcca4371b8ef2e2a \
                    sha256  afb7b5dece2633a5e00a81d787b2ec819197a18a52f9947868c351e5f06f5635 \
                    size    1102058

depends_lib-append  port:R-BH \
                    port:R-cpp11 \
                    port:R-futile.logger \
                    port:R-snow

# Some optional deps are dropped.
depends_test-append port:R-batchtools \
                    port:R-BBmisc \
                    port:R-BiocGenerics \
                    port:R-BiocStyle \
                    port:R-data.table \
                    port:R-doParallel \
                    port:R-foreach \
                    port:R-GenomicAlignments \
                    port:R-GenomicRanges \
                    port:R-knitr \
                    port:R-Rmpi \
                    port:R-Rsamtools \
                    port:R-RUnit \
                    port:R-ShortRead \
                    port:R-VariantAnnotation

# FIXME: there are MPI-related failures in tests, at least on PowerPC:
# Error in DEACTIVATED("MPI tests not run") : MPI tests not run
# *** caught segfault ***
# address 0x11e81414, cause 'memory not mapped'
# Code from vignettes runs fine, however.
test.run            no
