# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

PortSystem          1.0
PortGroup           R 1.0

R.setup             bioconductor Bioconductor phyloseq 1.52.0
revision            1
categories-append   bioconductor
platforms           {darwin any}
maintainers         nomaintainer
license             AGPL-3
description         Handling and analysis of high-throughput microbiome census data
long_description    {*}${description}
checksums           rmd160  b57342b43d675d34001b66863d616cf0ce59522d \
                    sha256  396a1bd8e4d379d278a370528324fa82f51f1d99bddf6c3d1050edb2f9d42e7b \
                    size    6358865
supported_archs     noarch

depends_lib-append  port:R-ade4 \
                    port:R-ape \
                    port:R-Biobase \
                    port:R-BiocGenerics \
                    port:R-biomformat \
                    port:R-Biostrings \
                    port:R-data.table \
                    port:R-foreach \
                    port:R-ggplot2 \
                    port:R-igraph \
                    port:R-multtest \
                    port:R-plyr \
                    port:R-reshape2 \
                    port:R-scales \
                    port:R-vegan

# Test dep on R-metagenomeSeq is dropped.
depends_test-append port:R-BiocStyle \
                    port:R-DESeq2 \
                    port:R-genefilter \
                    port:R-knitr \
                    port:R-magrittr \
                    port:R-rmarkdown \
                    port:R-testthat

test.run            yes